species:   Clros
pid:       PID2246
parent:    cro-mir-42
paralog:   
locus:     CADEHS020000485.2:9680-9749
matures:   ['UACACCCAAUGUCGCUGAUG', 'GCAGUGAUGUUGGGUGUUUGG']
srr:       ERR5950930
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950930.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950930.cram CADEHS020000485.2:9680-9749

9 out of bounds
21 alignments
7 proper strand
6 stranded perfect matches

*********************                           **********************
GCAGUGAUGUUGGGUGUUUGGGCUCGGUCGUUGCAUCUCGUGAAUGGUUCUACACCCAAUGUCGCUGAUG
.((((((((((((((((..(((((....((........)).....))))).))))))))))))))))...
--------------------------------------------------UACACCCAAUGUCGCUGAUG l=20 a=3 c
GCAGUGAUGUUGGGUGUUUGG------------------------------------------------- l=21 a=0 c*
--------------------------------------------------UACACCCAAUGUCGCUGAUG l=20 a=3 ma
GCAGUGAUGUUGGGUGUUUGG------------------------------------------------- l=21 a=0 ma*

--------------------------------------------------UACACCCAAUGUCGCUGAUG l=20 a=3 (c,ma)
----------------------------------AUCUCGUGAAUGcUU--------------------- l=15 a=1 
------------------------------UUGCAUCUCGUGAAUGGUU--------------------- l=19 a=2 
---------------------------UCGUUGCAUCUCGUGAAUGG----------------------- l=20 a=1 

mb-01011
ax-1011011
ku-01
ss-101110011100
fn-101
